@article{thies,

title = {Modelling altered signalling of G-protein coupled receptors in inflamed environment to advance drug design},

author = {Arne Thies and Vikram Sunkara and Sourav Ray and Hanna Wulkow and M Özgür Celik and Fatih Yergöz and Christof Schütte and Christoph Stein and Marcus Weber and Stefanie Winkelmann},

year  = {2023},

date = {2023-01-01},

journal = {Scientific Reports},

volume = {13},

number = {1},

pages = {1–12},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{wolf+al2023,

title = {The Decision Theatre Triangle for societal challenges—An example case and research needs},

author = {Sarah Wolf and Steffen Fürst and Andreas Geiges and Manfred Laublichler and Jahel Mielke and Gesine Steudle and Konstantin Winter and Carlo Jaeger},

issn = {0959-6526},

year  = {2023},

date = {2023-01-01},

journal = {Journal of Cleaner Production},

volume = {394},

pages = {136299},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{e25030416,

title = {Galilean Bulk-Surface Electrothermodynamics and Applications to Electrochemistry},

author = {Rüdiger Müller and Manuel Landstorfer},

url = {https://www.mdpi.com/1099-4300/25/3/416},

doi = {10.3390/e25030416},

issn = {1099-4300},

year  = {2023},

date = {2023-01-01},

journal = {Entropy},

volume = {25},

number = {3},

abstract = {In this work, the balance equations of non-equilibrium thermodynamics are coupled to Galilean limit systems of the Maxwell equations, i.e., either to (i) the quasi-electrostatic limit or (ii) the quasi-magnetostatic limit. We explicitly consider a volume Ω, which is divided into Ω+ and Ω− by a possibly moving singular surface S, where a charged reacting mixture of a viscous medium can be present on each geometrical entity (Ω+,S,Ω−). By the restriction to the Galilean limits of the Maxwell equations, we achieve that only subsystems of equations for matter and electromagnetic fields are coupled that share identical transformation properties with respect to observer transformations. Moreover, the application of an entropy principle becomes more straightforward and finally helps estimate the limitations of the more general approach based the full set of Maxwell equations. Constitutive relations are provided based on an entropy principle, and particular care is taken in the analysis of the stress tensor and the momentum balance in the general case of non-constant scalar susceptibility. Finally, we summarise the application of the derived model framework to an electrochemical system with surface reactions.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{SchV21a,

title = {SOBMOR: Structured optimization-based model order reduction},

author = {Schwerdtner, Paul and Voigt, Matthias},

doi = {10.1137/20M1380235},

year  = {2023},

date = {2023-01-01},

urldate = {2021-01-01},

journal = {SIAM Journal on Scientific Computing},

volume = {45},

number = {2},

pages = {A502-A529},

abstract = {Abstract. Model order reduction (MOR) methods that are designed to preserve structural features of a given full order model (FOM) often suffer from a lower accuracy when compared to their non-structure-preserving counterparts. In this paper, we present a framework for structure-preserving MOR, which allows us to compute structured reduced order models (ROMs) with a much higher accuracy. The framework is based on parameter optimization, i.e., the elements of the system matrices of the ROM are iteratively varied to minimize an objective functional that measures the difference between the FOM and the ROM. The structural constraints can be encoded in the parametrization of the ROM. The method only depends on frequency response data and can thus be applied to a wide range of dynamical systems. We illustrate the effectiveness of our method on a port-Hamiltonian and on a symmetric second-order system in a comparison with other structure-preserving MOR algorithms.},

note = {Revision submitted for publication, preliminary version 

	available as Preprint arXiv:2011.07567},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{zbMATH07738459,

title = {On the geometry of elementary flux modes},

author = {Frederik Wieder and Martin Henk and Alexander Bockmayr},

doi = {10.1007/s00285-023-01982-w},

issn = {0303-6812},

year  = {2023},

date = {2023-01-01},

journal = {J. Math. Biol.},

volume = {87},

number = {3},

pages = {22},

note = {Id/No 50},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hanik2023,

title = {Intrinsic shape analysis in archaeology: A case study on ancient sundials},

author = {Martin Hanik and Benjamin Ducke and Hans-Christian Hege and Friederike Fless and Christoph Tycowicz},

doi = {10.1145/3606698},

year  = {2023},

date = {2023-01-01},

journal = {Journal on Computing and Cultural Heritage},

volume = {16},

number = {4},

pages = {1 – 26},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{geiersbach2023optimality,

title = {Optimality conditions in control problems with random state constraints in probabilistic or almost-sure form},

author = {Caroline Geiersbach and René Henrion},

year  = {2023},

date = {2023-01-01},

journal = {WIAS Preprint 3021},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{geiersbach2023numerical,

title = {Numerical solution of an optimal control problem with probabilistic and almost sure state constraints},

author = {Caroline Geiersbach and René Henrion and Pedro Pérez-Aros},

year  = {2023},

date = {2023-01-01},

journal = {WIAS Preprint 3062},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{rgks_wavetrain_23,

title = {WaveTrain: A python package for numerical quantum mechanics of chain-like systems based on tensor trains},

author = {Jerome Riedel and Patrick Gelß and Rupert Klein and Burkhard Schmidt},

url = {https://pubs.aip.org/aip/jcp/article/158/16/164801/2887212/WaveTrain-A-Python-package-for-numerical-quantum},

doi = {10.1063/5.0147314},

year  = {2023},

date = {2023-01-01},

journal = {The Journal of Chemical Physics},

volume = {158},

number = {16},

pages = {164801},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{ernst2022recovery,

title = {Rate-limiting recovery processes in neurotransmission 

	dynamics},

author = {Ariane Ernst and Nathalie Unger and Christof Schütte and Alexander Walter and Stefanie Winkelmann},

year  = {2023},

date = {2023-01-01},

journal = {submitted},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gelss2023,

title = {Quantum dynamics of coupled excitons and phonons in chain-like systems: 

	Tensor train approaches and higher-order propagators},

author = {Patrick Gelss and Rupert Klein and Sebastian Matera and Burkhard Schmidt},

year  = {2023},

date = {2023-01-01},

journal = {arXiv:2302.03568},

keywords = {},

pubstate = {published},

tppubtype = {article}

}